recipe bioconductor-interest

Intron-Exon Retention Estimator

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/IntEREst.html

License:

GPL-2

Recipe:

/bioconductor-interest/meta.yaml

Links:

doi: 10.18129/B9.bioc.IntEREst

This package performs Intron-Exon Retention analysis on RNA-seq data (.bam files).

package bioconductor-interest

Versions:

1.22.2-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.1-0, 

1.22.2-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.1-0,  1.4.1-0,  1.2.2-1

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-dexseq >=1.44.0,<1.45.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-seqlogo >=1.64.0,<1.65.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-dbi

• r-rmysql

• r-seqinr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-interest

and update with:

conda update bioconductor-interest

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-interest:<tag>

(see bioconductor-interest/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-interest/README.html)