recipe bioconductor-interest

Intron-Exon Retention Estimator

Homepage

https://bioconductor.org/packages/3.12/bioc/html/IntEREst.html

License

GPL-2

Recipe

/bioconductor-interest/meta.yaml

Links

doi: 10.18129/B9.bioc.IntEREst

This package performs Intron-Exon Retention analysis on RNA-seq data (.bam files).

package bioconductor-interest

Versions

1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.1-0,  1.4.1-0,  1.2.2-1

Depends

• bioconductor-biocgenerics >=0.36.0,<0.37.0

• bioconductor-biocparallel >=1.24.0,<1.25.0

• bioconductor-biostrings >=2.58.0,<2.59.0

• bioconductor-deseq2 >=1.30.0,<1.31.0

• bioconductor-dexseq >=1.36.0,<1.37.0

• bioconductor-edger >=3.32.0,<3.33.0

• bioconductor-genomicalignments >=1.26.0,<1.27.0

• bioconductor-genomicfeatures >=1.42.0,<1.43.0

• bioconductor-genomicranges >=1.42.0,<1.43.0

• bioconductor-iranges >=2.24.0,<2.25.0

• bioconductor-rsamtools >=2.6.0,<2.7.0

• bioconductor-s4vectors >=0.28.0,<0.29.0

• bioconductor-seqlogo >=1.56.0,<1.57.0

• bioconductor-summarizedexperiment >=1.20.0,<1.21.0

• r-base >=4.0,<4.1.0a0

• r-dbi

• r-rmysql

• r-seqinr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-interest

and update with:

conda update bioconductor-interest

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-interest:<tag>

(see bioconductor-interest/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-interest/README.html)