recipe bioconductor-interest

Intron-Exon Retention Estimator

Homepage

https://bioconductor.org/packages/3.10/bioc/html/IntEREst.html

License

GPL-2

Recipe

/bioconductor-interest/meta.yaml

Links

doi: 10.18129/B9.bioc.IntEREst

This package performs Intron-Exon Retention analysis on RNA-seq data (.bam files).

package bioconductor-interest

Versions

1.10.0-0, 1.8.0-1, 1.6.1-0, 1.4.1-0, 1.2.2-1

Depends

• bioconductor-biocgenerics >=0.32.0,<0.33.0

• bioconductor-biocparallel >=1.20.0,<1.21.0

• bioconductor-biostrings >=2.54.0,<2.55.0

• bioconductor-deseq2 >=1.26.0,<1.27.0

• bioconductor-dexseq >=1.32.0,<1.33.0

• bioconductor-edger >=3.28.0,<3.29.0

• bioconductor-genomicalignments >=1.22.0,<1.23.0

• bioconductor-genomicfeatures >=1.38.0,<1.39.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-rsamtools >=2.2.0,<2.3.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• bioconductor-seqlogo >=1.52.0,<1.53.0

• bioconductor-summarizedexperiment >=1.16.0,<1.17.0

• r-base >=3.6,<3.7.0a0

• r-dbi

• r-rmysql

• r-seqinr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-interest

and update with:

conda update bioconductor-interest

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-interest:<tag>

(see bioconductor-interest/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-interest/README.html)