recipe bioconductor-interest

Intron-Exon Retention Estimator

Homepage

https://bioconductor.org/packages/3.14/bioc/html/IntEREst.html

License

GPL-2

Recipe

/bioconductor-interest/meta.yaml

Links

doi: 10.18129/B9.bioc.IntEREst

This package performs Intron-Exon Retention analysis on RNA-seq data (.bam files).

package bioconductor-interest

Versions

1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.1-0,  1.4.1-0, 

1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.1-0,  1.4.1-0,  1.2.2-1

Depends

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-deseq2 >=1.34.0,<1.35.0

• bioconductor-dexseq >=1.40.0,<1.41.0

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-genomicalignments >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-seqlogo >=1.60.0,<1.61.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-dbi

• r-rmysql

• r-seqinr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-interest

and update with:

conda update bioconductor-interest

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-interest:<tag>

(see bioconductor-interest/tags for valid values for <tag>)

Download stats

Link to this page

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