- recipe bioconductor-intramirexplorer
Predicting Targets for Drosophila Intragenic miRNAs
- Homepage:
https://bioconductor.org/packages/3.18/bioc/html/IntramiRExploreR.html
- License:
GPL-2
- Recipe:
Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.
- package bioconductor-intramirexplorer¶
- versions:
1.24.0-0
,1.22.0-0
,1.20.0-0
,1.16.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.16.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
- depends bioconductor-fgnet:
>=3.36.0,<3.37.0
- depends r-base:
>=4.3,<4.4.0a0
- depends r-igraph:
>=1.0.1
- depends r-knitr:
>=1.12.3
- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-intramirexplorer and update with:: mamba update bioconductor-intramirexplorer
To create a new environment, run:
mamba create --name myenvname bioconductor-intramirexplorer
with
myenvname
being a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-intramirexplorer:<tag> (see `bioconductor-intramirexplorer/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-intramirexplorer/README.html)