-
recipe
bioconductor-intramirexplorer¶ Predicting Targets for Drosophila Intragenic miRNAs
- Homepage
https://bioconductor.org/packages/3.11/bioc/html/IntramiRExploreR.html
- License
GPL-2
- Recipe
Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.
-
package
bioconductor-intramirexplorer¶ 
- Versions
1.10.0-0, 1.8.0-0, 1.6.0-1, 1.6.0-0, 1.4.0-0
- Depends
bioconductor-fgnet >=3.22.0,<3.23.0
r-base >=4.0,<4.1.0a0
r-igraph >=1.0.1
r-knitr >=1.12.3
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-intramirexplorer
and update with:
conda update bioconductor-intramirexplorer
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-intramirexplorer:<tag>
(see bioconductor-intramirexplorer/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-intramirexplorer/README.html)