recipe bioconductor-intramirexplorer

Predicting Targets for Drosophila Intragenic miRNAs






Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.

package bioconductor-intramirexplorer

(downloads) docker_bioconductor-intramirexplorer


1.10.0-0, 1.8.0-0, 1.6.0-1, 1.6.0-0, 1.4.0-0

Required By


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-intramirexplorer

and update with:

conda update bioconductor-intramirexplorer

or use the docker container:

docker pull<tag>

(see bioconductor-intramirexplorer/tags for valid values for <tag>)