recipe bioconductor-intramirexplorer

Predicting Targets for Drosophila Intragenic miRNAs

Homepage

https://bioconductor.org/packages/3.12/bioc/html/IntramiRExploreR.html

License

GPL-2

Recipe

/bioconductor-intramirexplorer/meta.yaml

Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.

package bioconductor-intramirexplorer

(downloads) docker_bioconductor-intramirexplorer

Versions

1.12.0-01.10.0-01.8.0-01.6.0-11.6.0-01.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-intramirexplorer

and update with:

conda update bioconductor-intramirexplorer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-intramirexplorer:<tag>

(see bioconductor-intramirexplorer/tags for valid values for <tag>)