- recipe bioconductor-intramirexplorer
Predicting Targets for Drosophila Intragenic miRNAs
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/IntramiRExploreR.html
- License:
GPL-2
- Recipe:
Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.
- package bioconductor-intramirexplorer¶
-
- Versions:
1.20.0-0
,1.16.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
- Depends:
bioconductor-fgnet
>=3.32.0,<3.33.0
r-base
>=4.2,<4.3.0a0
r-igraph
>=1.0.1
r-knitr
>=1.12.3
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-intramirexplorer
and update with:
conda update bioconductor-intramirexplorer
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-intramirexplorer:<tag>
(see bioconductor-intramirexplorer/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-intramirexplorer/README.html)