# bioconductor-ioniser¶

IONiseR provides tools for the quality assessment of Oxford Nanopore MinION data. It extracts summary statistics from a set of fast5 files and can be used either before or after base calling. In addition to standard summaries of the read-types produced, it provides a number of plots for visualising metrics relative to experiment run time or spatially over the surface of a flowcell.

## Installation¶

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ioniser


and update with:

conda update bioconductor-ioniser


A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-ioniser.