recipe bioconductor-ioniser

IONiseR provides tools for the quality assessment of Oxford Nanopore MinION data. It extracts summary statistics from a set of fast5 files and can be used either before or after base calling. In addition to standard summaries of the read-types produced, it provides a number of plots for visualising metrics relative to experiment run time or spatially over the surface of a flowcell.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/IONiseR.html

License

MIT + file LICENSE

Recipe

/bioconductor-ioniser/meta.yaml

Links

biotools: ioniser, doi: 10.1038/nmeth.3252

package bioconductor-ioniser

(downloads) docker_bioconductor-ioniser

Versions

2.6.0-0, 2.4.0-0, 2.2.0-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-rhdf5

>=2.26.0,<2.27.0

Depends bioconductor-shortread

>=1.40.0,<1.41.0

Depends bioconductor-xvector

>=0.22.0,<0.23.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-bit64

Depends r-dplyr

Depends r-ggplot2

Depends r-magrittr

Depends r-stringr

Depends r-tibble

Depends r-tidyr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ioniser

and update with:

conda update bioconductor-ioniser

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ioniser:<tag>

(see bioconductor-ioniser/tags for valid values for <tag>)