recipe bioconductor-jaspar2020

Data package for JASPAR database (version 2020)






Data package for JASPAR2020. To search this databases, please use the package TFBSTools (>= 1.23.1).

package bioconductor-jaspar2020

(downloads) docker_bioconductor-jaspar2020



depends bioconductor-data-packages:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-jaspar2020

and update with::

   mamba update bioconductor-jaspar2020

To create a new environment, run:

mamba create --name myenvname bioconductor-jaspar2020

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-jaspar2020/tags`_ for valid values for ``<tag>``)

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