recipe bioconductor-jaspar2022

Data package for JASPAR database (version 2022)

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/JASPAR2022.html

License:

GPL-2

Recipe:

/bioconductor-jaspar2022/meta.yaml

JASPAR is an open-access database containing manually curated, non-redundant transcription factor (TF) binding profiles for TFs across six taxonomic groups. In this 9th release, we expanded the CORE collection with 341 new profiles (148 for plants, 101 for vertebrates, 85 for urochordates, and 7 for insects), which corresponds to a 19% expansion over the previous release. To search thisdatabases, please use the package TFBSTools (>= 1.31.2).

package bioconductor-jaspar2022

(downloads) docker_bioconductor-jaspar2022

versions:

0.99.7-1,  0.99.7-0

depends bioconductor-biocfilecache:

>=2.8.0,<2.9.0

depends bioconductor-data-packages:

>=20230706

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-jaspar2022

and update with::

   mamba update bioconductor-jaspar2022

To create a new environment, run:

mamba create --name myenvname bioconductor-jaspar2022

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-jaspar2022:<tag>

(see `bioconductor-jaspar2022/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-jaspar2022/README.html)