Package Recipe 'bioconductor-jaspar2022'

recipe bioconductor-jaspar2022

Data package for JASPAR database (version 2022)

Homepage:: https://bioconductor.org/packages/3.16/data/annotation/html/JASPAR2022.html
License:: GPL-2
Recipe:: /bioconductor-jaspar2022/meta.yaml

JASPAR is an open-access database containing manually curated, non-redundant transcription factor (TF) binding profiles for TFs across six taxonomic groups. In this 9th release, we expanded the CORE collection with 341 new profiles (148 for plants, 101 for vertebrates, 85 for urochordates, and 7 for insects), which corresponds to a 19% expansion over the previous release. To search thisdatabases, please use the package TFBSTools (>= 1.31.2).

package bioconductor-jaspar2022¶

Versions:

0.99.7-0

Depends:

bioconductor-biocfilecache >=2.6.0,<2.7.0
bioconductor-data-packages >=20221103
curl
r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-jaspar2022

and update with:

conda update bioconductor-jaspar2022

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-jaspar2022:<tag>

(see bioconductor-jaspar2022/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-jaspar2022/README.html)