recipe bioconductor-kegggraph

KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/KEGGgraph.html

License:

GPL (>= 2)

Recipe:

/bioconductor-kegggraph/meta.yaml

Links:

biotools: kegggraph

KEGGGraph is an interface between KEGG pathway and graph object as well as a collection of tools to analyze, dissect and visualize these graphs. It parses the regularly updated KGML (KEGG XML) files into graph models maintaining all essential pathway attributes. The package offers functionalities including parsing, graph operation, visualization and etc.

package bioconductor-kegggraph

(downloads) docker_bioconductor-kegggraph

versions:
1.62.0-0,  1.60.0-0,  1.58.0-0,  1.54.0-0,  1.52.0-0,  1.50.0-1,  1.50.0-0,  1.48.0-0,  1.46.0-0, 

1.62.0-0,  1.60.0-0,  1.58.0-0,  1.54.0-0,  1.52.0-0,  1.50.0-1,  1.50.0-0,  1.48.0-0,  1.46.0-0,  1.44.0-1,  1.42.0-0,  1.40.0-0,  1.38.1-0,  1.38.0-0,  1.30.0-0,  1.28.0-0

depends bioconductor-graph:

>=1.80.0,<1.81.0

depends bioconductor-rgraphviz:

>=2.46.0,<2.47.0

depends r-base:

>=4.3,<4.4.0a0

depends r-rcurl:

depends r-xml:

>=2.3-0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-kegggraph

and update with::

   mamba update bioconductor-kegggraph

To create a new environment, run:

mamba create --name myenvname bioconductor-kegggraph

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-kegggraph:<tag>

(see `bioconductor-kegggraph/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-kegggraph/README.html)