recipe bioconductor-keggrest

Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/KEGGREST.html

License:

Artistic-2.0

Recipe:

/bioconductor-keggrest/meta.yaml

Links:

biotools: keggrest, doi: 10.1007/s11845-015-1283-8

A package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST server. Based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.

package bioconductor-keggrest

(downloads) docker_bioconductor-keggrest

versions:
1.46.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-0,  1.34.0-0,  1.32.0-0,  1.30.1-0,  1.30.0-0,  1.28.0-0, 

1.46.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-0,  1.34.0-0,  1.32.0-0,  1.30.1-0,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0,  1.20.2-0,  1.18.0-0,  1.16.1-0,  1.14.1-0,  1.12.3-0,  1.10.1-0

depends bioconductor-biostrings:

>=2.74.0,<2.75.0

depends r-base:

>=4.4,<4.5.0a0

depends r-httr:

depends r-png:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-keggrest

and update with::

   mamba update bioconductor-keggrest

To create a new environment, run:

mamba create --name myenvname bioconductor-keggrest

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-keggrest:<tag>

(see `bioconductor-keggrest/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-keggrest/README.html)