- recipe bioconductor-kissde
Retrieves Condition-Specific Variants in RNA-Seq Data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/kissDE.html
- License
GPL (>= 2)
- Recipe
Retrieves condition-specific variants in RNA-seq data (SNVs, alternative-splicings, indels). It has been developed as a post-treatment of 'KisSplice' but can also be used with user's own data.
- package bioconductor-kissde¶
-
- Versions
1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-deseq2
>=1.34.0,<1.35.0
bioconductor-dss
>=2.42.0,<2.43.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-kissde
and update with:
conda update bioconductor-kissde
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-kissde:<tag>
(see bioconductor-kissde/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-kissde/README.html)