recipe bioconductor-kissde

Retrieves Condition-Specific Variants in RNA-Seq Data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/kissDE.html

License

GPL (>= 2)

Recipe

/bioconductor-kissde/meta.yaml

Retrieves condition-specific variants in RNA-seq data (SNVs, alternative-splicings, indels). It has been developed as a post-treatment of 'KisSplice' but can also be used with user's own data.

package bioconductor-kissde

Versions

1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-deseq2 >=1.34.0,<1.35.0

• bioconductor-dss >=2.42.0,<2.43.0

• r-aod

• r-base >=4.1,<4.2.0a0

• r-doparallel

• r-foreach

• r-ggplot2

• r-gplots

• r-matrixstats

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-kissde

and update with:

conda update bioconductor-kissde

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-kissde:<tag>

(see bioconductor-kissde/tags for valid values for <tag>)

Download stats

Link to this page

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