recipe bioconductor-kissde

Retrieves Condition-Specific Variants in RNA-Seq Data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/kissDE.html

License

GPL (>= 2)

Recipe

/bioconductor-kissde/meta.yaml

Retrieves condition-specific variants in RNA-seq data (SNVs, alternative-splicings, indels). It has been developed as a post-treatment of 'KisSplice' but can also be used with user's own data.

package bioconductor-kissde

Versions

1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-deseq2 >=1.28.0,<1.29.0

• bioconductor-dss >=2.36.0,<2.37.0

• r-aod

• r-base >=4.0,<4.1.0a0

• r-doparallel

• r-foreach

• r-ggplot2

• r-gplots

• r-matrixstats

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-kissde

and update with:

conda update bioconductor-kissde

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-kissde:<tag>

(see bioconductor-kissde/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-kissde/README.html)