recipe bioconductor-kodata

LINCS Knock-Out Data Package

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/KOdata.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-kodata/meta.yaml

Contains consensus genomic signatures (CGS) for experimental cell-line specific gene knock-outs as well as baseline gene expression data for a subset of experimental cell-lines. Intended for use with package KEGGlincs.

package bioconductor-kodata

(downloads) docker_bioconductor-kodata

versions:
1.28.0-0,  1.26.0-0,  1.24.0-0,  1.23.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0, 

1.28.0-0,  1.26.0-0,  1.24.0-0,  1.23.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.15.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-kodata

and update with::

   mamba update bioconductor-kodata

To create a new environment, run:

mamba create --name myenvname bioconductor-kodata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-kodata:<tag>

(see `bioconductor-kodata/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-kodata/README.html)