recipe bioconductor-leebamviews

leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/leeBamViews.html

License:

Artistic 2.0

Recipe:

/bioconductor-leebamviews/meta.yaml

data from PMID 19096707; prototype for managing multiple NGS samples

package bioconductor-leebamviews

Versions:

1.34.0-0,  1.30.1-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1, 

1.34.0-0,  1.30.1-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-data-packages >=20221108

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-leebamviews

and update with:

conda update bioconductor-leebamviews

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-leebamviews:<tag>

(see bioconductor-leebamviews/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-leebamviews/README.html)