recipe bioconductor-loomexperiment

LoomExperiment container






The LoomExperiment package provide a means to easily convert the Bioconductor "Experiment" classes to loom files and vice versa.

package bioconductor-loomexperiment

(downloads) docker_bioconductor-loomexperiment



depends bioconductor-biocio:


depends bioconductor-delayedarray:


depends bioconductor-genomicranges:


depends bioconductor-hdf5array:


depends bioconductor-rhdf5:


depends bioconductor-s4vectors:


depends bioconductor-singlecellexperiment:


depends bioconductor-summarizedexperiment:


depends r-base:


depends r-matrix:

depends r-stringr:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-loomexperiment

and update with::

   mamba update bioconductor-loomexperiment

To create a new environment, run:

mamba create --name myenvname bioconductor-loomexperiment

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-loomexperiment/tags`_ for valid values for ``<tag>``)

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