recipe bioconductor-loomexperiment

The LoomExperiment class provide a means to easily convert Bioconductor’s “Experiment” classes to loom files and vice versa.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/LoomExperiment.html

License

Artistic-2.0

Recipe

/bioconductor-loomexperiment/meta.yaml

package bioconductor-loomexperiment

(downloads) docker_bioconductor-loomexperiment

Versions

1.0.1-0

Depends bioconductor-delayedarray

>=0.8.0,<0.9.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-hdf5array

>=1.10.0,<1.11.0

Depends bioconductor-rhdf5

>=2.26.0,<2.27.0

Depends bioconductor-rtracklayer

>=1.42.0,<1.43.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-singlecellexperiment

>=1.4.0,<1.5.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-loomexperiment

and update with:

conda update bioconductor-loomexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-loomexperiment:<tag>

(see bioconductor-loomexperiment/tags for valid values for <tag>)