- recipe bioconductor-lumi
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
- Homepage:
- License:
LGPL (>= 2)
- Recipe:
- Links:
biotools: lumi
The lumi package provides an integrated solution for the Illumina microarray data analysis. It includes functions of Illumina BeadStudio (GenomeStudio) data input, quality control, BeadArray-specific variance stabilization, normalization and gene annotation at the probe level. It also includes the functions of processing Illumina methylation microarrays, especially Illumina Infinium methylation microarrays.
- package bioconductor-lumi¶
-
- Versions:
2.50.0-0
,2.46.0-1
,2.44.0-0
,2.42.0-1
,2.42.0-0
,2.40.0-0
,2.38.0-0
,2.36.0-1
,2.34.0-0
,2.50.0-0
,2.46.0-1
,2.44.0-0
,2.42.0-1
,2.42.0-0
,2.40.0-0
,2.38.0-0
,2.36.0-1
,2.34.0-0
,2.32.0-0
,2.30.0-0
- Depends:
bioconductor-affy
>=1.76.0,<1.77.0
bioconductor-annotate
>=1.76.0,<1.77.0
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-methylumi
>=2.44.0,<2.45.0
bioconductor-preprocesscore
>=1.60.0,<1.61.0
r-base
>=4.2,<4.3.0a0
r-mgcv
>=1.4-0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-lumi
and update with:
conda update bioconductor-lumi
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-lumi:<tag>
(see bioconductor-lumi/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-lumi/README.html)