- recipe bioconductor-magar
MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data
- Homepage:
- License:
GPL-3
- Recipe:
"Methylation-Aware Genotype Association in R" (MAGAR) computes methQTL from DNA methylation and genotyping data from matched samples. MAGAR uses a linear modeling stragety to call CpGs/SNPs that are methQTLs. MAGAR accounts for the local correlation structure of CpGs.
- package bioconductor-magar¶
-
- Versions:
1.6.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-crlmm
>=1.56.0,<1.57.0
bioconductor-hdf5array
>=1.26.0,<1.27.0
bioconductor-impute
>=1.72.0,<1.73.0
bioconductor-rnbeads
>=2.16.0,<2.17.0
bioconductor-rnbeads.hg19
>=1.30.0,<1.31.0
bioconductor-snpstats
>=1.48.0,<1.49.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-magar
and update with:
conda update bioconductor-magar
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-magar:<tag>
(see bioconductor-magar/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-magar/README.html)