recipe bioconductor-magar

MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MAGAR.html

License:

GPL-3

Recipe:

/bioconductor-magar/meta.yaml

"Methylation-Aware Genotype Association in R" (MAGAR) computes methQTL from DNA methylation and genotyping data from matched samples. MAGAR uses a linear modeling stragety to call CpGs/SNPs that are methQTLs. MAGAR accounts for the local correlation structure of CpGs.

package bioconductor-magar

Versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-crlmm >=1.56.0,<1.57.0

• bioconductor-hdf5array >=1.26.0,<1.27.0

• bioconductor-impute >=1.72.0,<1.73.0

• bioconductor-rnbeads >=2.16.0,<2.17.0

• bioconductor-rnbeads.hg19 >=1.30.0,<1.31.0

• bioconductor-snpstats >=1.48.0,<1.49.0

• r-argparse

• r-base >=4.2,<4.3.0a0

• r-bigstatsr

• r-data.table

• r-doparallel

• r-ff

• r-igraph

• r-jsonlite

• r-plyr

• r-reshape2

• r-rjson

• r-upsetr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-magar

and update with:

conda update bioconductor-magar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-magar:<tag>

(see bioconductor-magar/tags for valid values for <tag>)

Download stats

Link to this page

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