recipe bioconductor-masigpro

Significant Gene Expression Profile Differences in Time Course Gene Expression Data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/maSigPro.html

License

GPL (>= 2)

Recipe

/bioconductor-masigpro/meta.yaml

Links

biotools: masigpro, doi: 10.1093/bioinformatics/btu333

maSigPro is a regression based approach to find genes for which there are significant gene expression profile differences between experimental groups in time course microarray and RNA-Seq experiments.

package bioconductor-masigpro

Versions

1.60.0-0, 1.58.0-0, 1.56.0-1, 1.54.0-0, 1.52.0-0, 1.50.0-0, 1.49.4-0, 1.49.3-0, 1.49.0-0, 1.48.0-0, 1.46.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• r-base >=4.0,<4.1.0a0

• r-mass

• r-mclust

• r-venn

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-masigpro

and update with:

conda update bioconductor-masigpro

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-masigpro:<tag>

(see bioconductor-masigpro/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-masigpro/README.html)