recipe bioconductor-mast

Model-based Analysis of Single Cell Transcriptomics

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MAST.html

License:

GPL(>= 2)

Recipe:

/bioconductor-mast/meta.yaml

Links:

biotools: mast, doi: 10.1186/s13059-015-0844-5

Methods and models for handling zero-inflated single cell assay data.

package bioconductor-mast

Versions:

1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.1-0, 

1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.1-0,  1.6.1-0,  1.4.1-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-abind

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-ggplot2

• r-plyr

• r-progress

• r-reshape2

• r-stringr

Required By:

• bioconductor-singlecelltk

• bioconductor-powsc

• r-dwls

• r-scopfunctions

• bioconductor-benchdamic

• bioconductor-celaref

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mast

and update with:

conda update bioconductor-mast

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mast:<tag>

(see bioconductor-mast/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mast/README.html)