- recipe bioconductor-matrixrider
Obtain total affinity and occupancies for binding site matrices on a given sequence
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/MatrixRider.html
- License:
GPL-3
- Recipe:
Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.
- package bioconductor-matrixrider¶
-
- Versions:
1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.14.0-1
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.14.0-1
,1.14.0-0
- Depends:
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-tfbstools
>=1.32.0,<1.33.0
bioconductor-xvector
>=0.34.0,<0.35.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-matrixrider
and update with:
conda update bioconductor-matrixrider
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-matrixrider:<tag>
(see bioconductor-matrixrider/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-matrixrider/README.html)