recipe bioconductor-matrixrider

Obtain total affinity and occupancies for binding site matrices on a given sequence

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MatrixRider.html

License:

GPL-3

Recipe:

/bioconductor-matrixrider/meta.yaml

Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.

package bioconductor-matrixrider

(downloads) docker_bioconductor-matrixrider

Versions:
1.30.0-01.26.0-21.26.0-11.26.0-01.24.0-01.22.0-11.22.0-01.20.0-01.18.0-0

1.30.0-01.26.0-21.26.0-11.26.0-01.24.0-01.22.0-11.22.0-01.20.0-01.18.0-01.16.0-11.14.0-11.14.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-matrixrider

and update with:

conda update bioconductor-matrixrider

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-matrixrider:<tag>

(see bioconductor-matrixrider/tags for valid values for <tag>)

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