recipe bioconductor-matrixrider

Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/MatrixRider.html

License

GPL-3

Recipe

/bioconductor-matrixrider/meta.yaml

package bioconductor-matrixrider

(downloads) docker_bioconductor-matrixrider

Versions

1.14.0-1, 1.14.0-0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-tfbstools

>=1.20.0,<1.21.0

Depends bioconductor-xvector

>=0.22.0,<0.23.0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-matrixrider

and update with:

conda update bioconductor-matrixrider

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-matrixrider:<tag>

(see bioconductor-matrixrider/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-matrixrider/README.html)