recipe bioconductor-matrixrider

Obtain total affinity and occupancies for binding site matrices on a given sequence

Homepage

https://bioconductor.org/packages/3.14/bioc/html/MatrixRider.html

License

GPL-3

Recipe

/bioconductor-matrixrider/meta.yaml

Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.

package bioconductor-matrixrider

Versions

1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.14.0-1,  1.14.0-0

Depends

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-tfbstools >=1.32.0,<1.33.0

• bioconductor-xvector >=0.34.0,<0.35.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.4.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-matrixrider

and update with:

conda update bioconductor-matrixrider

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-matrixrider:<tag>

(see bioconductor-matrixrider/tags for valid values for <tag>)

Download stats

Link to this page

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