bioconductor-mbased

downloads

The package implements MBASED algorithm for detecting allele-specific gene expression from RNA count data, where allele counts at individual loci (SNVs) are integrated into a gene-specific measure of ASE, and utilizes simulations to appropriately assess the statistical significance of observed ASE.

Home http://bioconductor.org/packages/3.6/bioc/html/MBASED.html
Versions 1.10.0, 1.12.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-mbased

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mbased

and update with:

conda update bioconductor-mbased

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-mbased.