recipe bioconductor-mbpcr

Bayesian Piecewise Constant Regression for DNA copy number estimation

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/mBPCR.html

License:

GPL (>= 2)

Recipe:

/bioconductor-mbpcr/meta.yaml

It contains functions for estimating the DNA copy number profile using mBPCR with the aim of detecting regions with copy number changes.

package bioconductor-mbpcr

(downloads) docker_bioconductor-mbpcr

versions:
1.56.0-0,  1.54.0-0,  1.52.0-0,  1.48.0-0,  1.46.0-0,  1.44.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-0, 

1.56.0-0,  1.54.0-0,  1.52.0-0,  1.48.0-0,  1.46.0-0,  1.44.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.36.0-0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends bioconductor-gwastools:

>=1.48.0,<1.49.0

depends bioconductor-oligoclasses:

>=1.64.0,<1.65.0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-mbpcr

and update with::

   mamba update bioconductor-mbpcr

To create a new environment, run:

mamba create --name myenvname bioconductor-mbpcr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-mbpcr:<tag>

(see `bioconductor-mbpcr/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mbpcr/README.html)