recipe bioconductor-meal

Package to integrate methylation and expression data. It can also perform methylation or expression analysis alone. Several plotting functionalities are included as well as a new region analysis based on redundancy analysis. Effect of SNPs on a region can also be estimated.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/MEAL.html

License

Artistic-2.0

Recipe

/bioconductor-meal/meta.yaml

package bioconductor-meal

(downloads) docker_bioconductor-meal

Versions

1.12.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-dmrcate

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-gviz

>=1.26.0,<1.27.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-minfi

>=1.28.0,<1.29.0

Depends bioconductor-missmethyl

>=1.16.0,<1.17.0

Depends bioconductor-multidataset

>=1.10.0,<1.11.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ggplot2

>=2.0.0

Depends r-isva

Depends r-matrixstats

Depends r-permute

Depends r-smartsva

Depends r-vegan

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-meal

and update with:

conda update bioconductor-meal

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-meal:<tag>

(see bioconductor-meal/tags for valid values for <tag>)