recipe bioconductor-medips

DNA IP-seq data analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MEDIPS.html

License:

GPL (>=2)

Recipe:

/bioconductor-medips/meta.yaml

Links:

biotools: medips

MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential coverage between groups of samples and saturation and correlation analysis.

package bioconductor-medips

Versions:

1.50.0-0,  1.46.0-0,  1.44.0-0,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.34.0-0, 

1.50.0-0,  1.46.0-0,  1.44.0-0,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.24.0-0

Depends:

• bioconductor-biomart >=2.54.0,<2.55.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-dnacopy >=1.72.0,<1.73.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-preprocesscore >=1.60.0,<1.61.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• r-base >=4.2,<4.3.0a0

• r-gtools

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-medips

and update with:

conda update bioconductor-medips

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-medips:<tag>

(see bioconductor-medips/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-medips/README.html)