recipe bioconductor-medips

DNA IP-seq data analysis

Homepage

https://bioconductor.org/packages/3.12/bioc/html/MEDIPS.html

License

GPL (>=2)

Recipe

/bioconductor-medips/meta.yaml

Links

biotools: medips

MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential coverage between groups of samples and saturation and correlation analysis.

package bioconductor-medips

Versions

1.42.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.24.0-0

Depends

• bioconductor-biomart >=2.46.0,<2.47.0

• bioconductor-biostrings >=2.58.0,<2.59.0

• bioconductor-bsgenome >=1.58.0,<1.59.0

• bioconductor-dnacopy >=1.64.0,<1.65.0

• bioconductor-edger >=3.32.0,<3.33.0

• bioconductor-genomicranges >=1.42.0,<1.43.0

• bioconductor-iranges >=2.24.0,<2.25.0

• bioconductor-preprocesscore >=1.52.0,<1.53.0

• bioconductor-rsamtools >=2.6.0,<2.7.0

• bioconductor-rtracklayer >=1.50.0,<1.51.0

• r-base >=4.0,<4.1.0a0

• r-gtools

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-medips

and update with:

conda update bioconductor-medips

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-medips:<tag>

(see bioconductor-medips/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-medips/README.html)