- recipe bioconductor-medips
DNA IP-seq data analysis
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/MEDIPS.html
- License
GPL (>=2)
- Recipe
- Links
biotools: medips
MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential coverage between groups of samples and saturation and correlation analysis.
- package bioconductor-medips¶
-
- Versions
1.46.0-0
,1.44.0-0
,1.42.0-1
,1.42.0-0
,1.40.0-0
,1.38.0-0
,1.36.0-1
,1.34.0-0
,1.32.0-0
,1.46.0-0
,1.44.0-0
,1.42.0-1
,1.42.0-0
,1.40.0-0
,1.38.0-0
,1.36.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-0
,1.24.0-0
- Depends
bioconductor-biomart
>=2.50.0,<2.51.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-bsgenome
>=1.62.0,<1.63.0
bioconductor-dnacopy
>=1.68.0,<1.69.0
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-preprocesscore
>=1.56.0,<1.57.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-medips
and update with:
conda update bioconductor-medips
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-medips:<tag>
(see bioconductor-medips/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-medips/README.html)