recipe bioconductor-medips

DNA IP-seq data analysis

Homepage

https://bioconductor.org/packages/3.12/bioc/html/MEDIPS.html

License

GPL (>=2)

Recipe

/bioconductor-medips/meta.yaml

Links

biotools: medips

MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential coverage between groups of samples and saturation and correlation analysis.

package bioconductor-medips

(downloads) docker_bioconductor-medips

Versions

1.42.0-01.40.0-01.38.0-01.36.0-11.34.0-01.32.0-01.30.0-01.28.0-01.24.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-medips

and update with:

conda update bioconductor-medips

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-medips:<tag>

(see bioconductor-medips/tags for valid values for <tag>)