- recipe bioconductor-metagene
A package to produce metagene plots
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/metagene.html
- License:
Artistic-2.0 | file LICENSE
- Recipe:
This package produces metagene plots to compare the behavior of DNA-interacting proteins at selected groups of genes/features. Bam files are used to increase the resolution. Multiple combination of group of bam files and/or group of genomic regions can be compared in a single analysis. Bootstraping analysis is used to compare the groups and locate regions with statistically different enrichment profiles.
- package bioconductor-metagene¶
-
- Versions:
2.30.0-0
,2.26.0-0
,2.24.0-0
,2.20.0-0
,2.18.0-0
,2.16.0-1
,2.14.0-0
- Depends:
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-ensdb.hsapiens.v86
>=2.99.0,<2.100.0
bioconductor-ensembldb
>=2.22.0,<2.23.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
r-base
>=4.2,<4.3.0a0
r-r6
>=2.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-metagene
and update with:
conda update bioconductor-metagene
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-metagene:<tag>
(see bioconductor-metagene/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-metagene/README.html)