recipe bioconductor-metagene

A package to produce metagene plots

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/metagene.html

License:

Artistic-2.0 | file LICENSE

Recipe:

/bioconductor-metagene/meta.yaml

This package produces metagene plots to compare the behavior of DNA-interacting proteins at selected groups of genes/features. Bam files are used to increase the resolution. Multiple combination of group of bam files and/or group of genomic regions can be compared in a single analysis. Bootstraping analysis is used to compare the groups and locate regions with statistically different enrichment profiles.

package bioconductor-metagene

Versions:

2.30.0-0,  2.26.0-0,  2.24.0-0,  2.20.0-0,  2.18.0-0,  2.16.0-1,  2.14.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-ensdb.hsapiens.v86 >=2.99.0,<2.100.0

• bioconductor-ensembldb >=2.22.0,<2.23.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-ggplot2

• r-gplots

• r-magrittr

• r-matrixstats

• r-purrr

• r-r6 >=2.0

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-metagene

and update with:

conda update bioconductor-metagene

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-metagene:<tag>

(see bioconductor-metagene/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-metagene/README.html)