- recipe bioconductor-metagenomeseq
Statistical analysis for sparse high-throughput sequencing
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/metagenomeSeq.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: metagenomeseq, doi: 10.1038/nmeth.2658
metagenomeSeq is designed to determine features (be it Operational Taxanomic Unit (OTU), species, etc.) that are differentially abundant between two or more groups of multiple samples. metagenomeSeq is designed to address the effects of both normalization and under-sampling of microbial communities on disease association detection and the testing of feature correlations.
- package bioconductor-metagenomeseq¶
-
- Versions:
1.40.0-0
,1.36.0-0
,1.34.0-0
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-0
,1.26.2-0
,1.24.1-0
,1.40.0-0
,1.36.0-0
,1.34.0-0
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-0
,1.26.2-0
,1.24.1-0
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-wrench
>=1.16.0,<1.17.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-metagenomeseq
and update with:
conda update bioconductor-metagenomeseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-metagenomeseq:<tag>
(see bioconductor-metagenomeseq/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-metagenomeseq/README.html)