recipe bioconductor-methrix

Fast and efficient summarization of generic bedGraph files from Bisufite sequencing

Homepage

https://bioconductor.org/packages/3.11/bioc/html/methrix.html

License

MIT + file LICENSE

Recipe

/bioconductor-methrix/meta.yaml

Bedgraph files generated by Bisulfite pipelines often come in various flavors. Critical downstream step requires summarization of these files into methylation/coverage matrices. This step of data aggregation is done by Methrix, including many other useful downstream functions.

package bioconductor-methrix

(downloads) docker_bioconductor-methrix

Versions

1.2.05-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methrix

and update with:

conda update bioconductor-methrix

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methrix:<tag>

(see bioconductor-methrix/tags for valid values for <tag>)