recipe bioconductor-methylclock

Methylclock - DNA methylation-based clocks

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/methylclock.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-methylclock/meta.yaml

This package allows to estimate chronological and gestational DNA methylation (DNAm) age as well as biological age using different methylation clocks. Chronological DNAm age (in years) : Horvath's clock, Hannum's clock, BNN, Horvath's skin+blood clock, PedBE clock and Wu's clock. Gestational DNAm age : Knight's clock, Bohlin's clock, Mayne's clock and Lee's clocks. Biological DNAm clocks : Levine's clock and Telomere Length's clock.

package bioconductor-methylclock

Versions:

1.4.0-1,  1.4.0-0,  1.0.1-1,  1.0.1-0,  1.0.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-impute >=1.72.0,<1.73.0

• bioconductor-methylclockdata >=1.6.0,<1.7.0

• bioconductor-minfi >=1.44.0,<1.45.0

• bioconductor-planet >=1.6.0,<1.7.0

• bioconductor-preprocesscore >=1.60.0,<1.61.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-devtools

• r-dplyr

• r-dynamictreecut

• r-ggplot2

• r-ggpmisc

• r-ggpubr

• r-gridextra

• r-performanceanalytics

• r-quadprog

• r-rcpp >=1.0.6

• r-rpmm

• r-tibble

• r-tidyr

• r-tidyverse

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-methylclock

and update with:

conda update bioconductor-methylclock

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylclock:<tag>

(see bioconductor-methylclock/tags for valid values for <tag>)

Download stats

Link to this page

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