recipe bioconductor-methylgsa

The main functions for methylGSA are methylglm and methylRRA. methylGSA implements logistic regression adjusting number of probes as a covariate. methylRRA adjusts multiple p-values of each gene by Robust Rank Aggregation. For more detailed help information, please see the vignette.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/methylGSA.html

License

GPL-2

Recipe

/bioconductor-methylgsa/meta.yaml

package bioconductor-methylgsa

(downloads) docker_bioconductor-methylgsa

Versions

1.0.2-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-clusterprofiler

>=3.10.0,<3.11.0

Depends bioconductor-go.db

>=3.7.0,<3.8.0

Depends bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19

>=0.6.0,<0.7.0

Depends bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19

>=0.6.0,<0.7.0

Depends bioconductor-missmethyl

>=1.16.0,<1.17.0

Depends bioconductor-org.hs.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-reactome.db

>=1.66.0,<1.67.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ggplot2

Depends r-robustrankaggreg

Depends r-stringr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylgsa

and update with:

conda update bioconductor-methylgsa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylgsa:<tag>

(see bioconductor-methylgsa/tags for valid values for <tag>)