-
recipe
bioconductor-methylgsa¶ The main functions for methylGSA are methylglm and methylRRA. methylGSA implements logistic regression adjusting number of probes as a covariate. methylRRA adjusts multiple p-values of each gene by Robust Rank Aggregation. For more detailed help information, please see the vignette.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/methylGSA.html
- License
GPL-2
- Recipe
-
package
bioconductor-methylgsa¶ 
- Versions
1.0.2-0
- Depends bioconductor-annotationdbi
>=1.44.0,<1.45.0
- Depends bioconductor-clusterprofiler
>=3.10.0,<3.11.0
- Depends bioconductor-go.db
>=3.7.0,<3.8.0
- Depends bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19
>=0.6.0,<0.7.0
- Depends bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19
>=0.6.0,<0.7.0
- Depends bioconductor-missmethyl
>=1.16.0,<1.17.0
- Depends bioconductor-org.hs.eg.db
>=3.7.0,<3.8.0
- Depends bioconductor-reactome.db
>=1.66.0,<1.67.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-ggplot2
- Depends r-robustrankaggreg
- Depends r-stringr
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-methylgsa
and update with:
conda update bioconductor-methylgsa
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-methylgsa:<tag>
(see bioconductor-methylgsa/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-methylgsa/README.html)