recipe bioconductor-methylgsa

Gene Set Analysis Using the Outcome of Differential Methylation

Homepage

https://bioconductor.org/packages/3.11/bioc/html/methylGSA.html

License

GPL-2

Recipe

/bioconductor-methylgsa/meta.yaml

The main functions for methylGSA are methylglm and methylRRA. methylGSA implements logistic regression adjusting number of probes as a covariate. methylRRA adjusts multiple p-values of each gene by Robust Rank Aggregation. For more detailed help information, please see the vignette.

package bioconductor-methylgsa

(downloads) docker_bioconductor-methylgsa

Versions

1.6.1-01.4.0-01.2.3-01.0.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylgsa

and update with:

conda update bioconductor-methylgsa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylgsa:<tag>

(see bioconductor-methylgsa/tags for valid values for <tag>)