- recipe bioconductor-methylgsa
Gene Set Analysis Using the Outcome of Differential Methylation
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/methylGSA.html
- License:
GPL-2
- Recipe:
The main functions for methylGSA are methylglm and methylRRA. methylGSA implements logistic regression adjusting number of probes as a covariate. methylRRA adjusts multiple p-values of each gene by Robust Rank Aggregation. For more detailed help information, please see the vignette.
- package bioconductor-methylgsa¶
-
- Versions:
1.16.0-0
,1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.1-0
,1.4.0-0
,1.2.3-0
,1.0.2-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-clusterprofiler
>=4.6.0,<4.7.0
bioconductor-go.db
>=3.16.0,<3.17.0
bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19
>=0.6.0,<0.7.0
bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19
>=0.6.0,<0.7.0
bioconductor-missmethyl
>=1.32.0,<1.33.0
bioconductor-org.hs.eg.db
>=3.16.0,<3.17.0
bioconductor-reactome.db
>=1.82.0,<1.83.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-methylgsa
and update with:
conda update bioconductor-methylgsa
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-methylgsa:<tag>
(see bioconductor-methylgsa/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-methylgsa/README.html)