recipe bioconductor-methylkit

methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing. It also has functions to analyze base-pair resolution 5hmC data from experimental protocols such as oxBS-Seq and TAB-Seq. Perl is needed to read SAM files only.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/methylKit.html

License

Artistic-2.0

Recipe

/bioconductor-methylkit/meta.yaml

Links

biotools: methylkit

package bioconductor-methylkit

(downloads) docker_bioconductor-methylkit

Versions

1.8.1-0, 1.8.0-0, 1.6.3-0, 1.4.0-0, 1.2.4-0, 1.0.0-0, 0.99.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylkit

and update with:

conda update bioconductor-methylkit

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylkit:<tag>

(see bioconductor-methylkit/tags for valid values for <tag>)