bioconductor-methylkit

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methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing. It also has functions to analyze base-pair resolution 5hmC data from experimental protocols such as oxBS-Seq and TAB-Seq. Perl is needed to read SAM files only.

Home http://bioconductor.org/packages/3.6/bioc/html/methylKit.html
Versions 0.99.2, 1.0.0, 1.2.4, 1.4.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-methylkit

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylkit

and update with:

conda update bioconductor-methylkit

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-methylkit.