recipe bioconductor-methylpipe

Memory efficient analysis of base resolution DNA methylation data in both the CpG and non-CpG sequence context. Integration of DNA methylation data derived from any methodology providing base- or low-resolution data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/methylPipe.html

License

GPL(>=2)

Recipe

/bioconductor-methylpipe/meta.yaml

Links

biotools: methylpipe

package bioconductor-methylpipe

(downloads) docker_bioconductor-methylpipe

Versions

1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicalignments

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-gviz

>=1.26.0,<1.27.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-marray

>=1.60.0,<1.61.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-data.table

Depends r-gplots

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylpipe

and update with:

conda update bioconductor-methylpipe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylpipe:<tag>

(see bioconductor-methylpipe/tags for valid values for <tag>)