recipe bioconductor-microbiomeprofiler

An R/shiny package for microbiome functional enrichment analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MicrobiomeProfiler.html

License:

GPL-2

Recipe:

/bioconductor-microbiomeprofiler/meta.yaml

This is an R/shiny package to perform functional enrichment analysis for microbiome data. This package was based on clusterProfiler. Moreover, MicrobiomeProfiler support KEGG enrichment analysis, COG enrichment analysis, Microbe-Disease association enrichment analysis, Metabo-Pathway analysis.

package bioconductor-microbiomeprofiler

Versions:

1.4.0-0,  1.0.0-0

Depends:

• bioconductor-clusterprofiler >=4.6.0,<4.7.0

• bioconductor-enrichplot >=1.18.0,<1.19.0

• r-base >=4.2,<4.3.0a0

• r-config

• r-dt

• r-ggplot2

• r-golem

• r-htmltools

• r-magrittr

• r-shiny >=1.6.0

• r-shinycustomloader

• r-shinywidgets

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-microbiomeprofiler

and update with:

conda update bioconductor-microbiomeprofiler

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-microbiomeprofiler:<tag>

(see bioconductor-microbiomeprofiler/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-microbiomeprofiler/README.html)