- recipe bioconductor-milor
Differential neighbourhood abundance testing on a graph
- Homepage
- License
GPL-3 + file LICENSE
- Recipe
This package performs single-cell differential abundance testing. Cell states are modelled as representative neighbourhoods on a nearest neighbour graph. Hypothesis testing is performed using a negative bionomial generalized linear model.
- package bioconductor-milor¶
-
- Versions
1.2.0-0
,1.0.0-0
- Depends
bioconductor-biocneighbors
>=1.12.0,<1.13.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-biocsingular
>=1.10.0,<1.11.0
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
r-matrix
>=1.3-0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-milor
and update with:
conda update bioconductor-milor
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-milor:<tag>
(see bioconductor-milor/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-milor/README.html)