recipe bioconductor-milor

Differential neighbourhood abundance testing on a graph

Homepage

https://bioconductor.org/packages/3.14/bioc/html/miloR.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-milor/meta.yaml

This package performs single-cell differential abundance testing. Cell states are modelled as representative neighbourhoods on a nearest neighbour graph. Hypothesis testing is performed using a negative bionomial generalized linear model.

package bioconductor-milor

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-biocneighbors >=1.12.0,<1.13.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-biocsingular >=1.10.0,<1.11.0

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-cowplot

• r-dplyr

• r-ggbeeswarm

• r-ggplot2

• r-ggraph

• r-ggrepel

• r-gtools

• r-igraph

• r-irlba

• r-matrix >=1.3-0

• r-matrixstats

• r-patchwork

• r-rcolorbrewer

• r-stringr

• r-tibble

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-milor

and update with:

conda update bioconductor-milor

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-milor:<tag>

(see bioconductor-milor/tags for valid values for <tag>)

Download stats

Link to this page

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