recipe bioconductor-minfi

Tools to analyze & visualize Illumina Infinium methylation arrays.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/minfi.html

License

Artistic-2.0

Recipe

/bioconductor-minfi/meta.yaml

Links

biotools: minfi

package bioconductor-minfi

Versions

1.28.0-0, 1.26.2-0, 1.24.0-0, 1.22.1-0, 1.20.0-0, 1.16.1-0

Depends

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-biocparallel >=1.16.0,<1.17.0

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-bumphunter >=1.24.0,<1.25.0

• bioconductor-delayedarray >=0.8.0,<0.9.0

• bioconductor-delayedmatrixstats >=1.4.0,<1.5.0

• bioconductor-genefilter >=1.64.0,<1.65.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-geoquery >=2.50.0,<2.51.0

• bioconductor-hdf5array >=1.10.0,<1.11.0

• bioconductor-illuminaio >=0.24.0,<0.25.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-limma >=3.38.0,<3.39.0

• bioconductor-preprocesscore >=1.44.0,<1.45.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-siggenes >=1.56.0,<1.57.0

• bioconductor-summarizedexperiment >=1.12.0,<1.13.0

• r-base >=3.5.1,<3.5.2.0a0

• r-beanplot

• r-data.table

• r-lattice

• r-mass

• r-mclust

• r-nlme

• r-nor1mix

• r-quadprog

• r-rcolorbrewer

• r-reshape

Required By

• bioconductor-champ

• bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19

• bioconductor-compartmap

• bioconductor-bigmelon

• bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19

• bioconductor-methyvim

• bioconductor-skewr

• bioconductor-flowsorted.cordblood.450k

• bioconductor-flowsorted.dlpfc.450k

• bioconductor-missmethyl

• bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19

• bioconductor-flowsorted.blood.450k

• bioconductor-methyvimdata

• bioconductor-meal

• bioconductor-illuminahumanmethylation450kmanifest

• bioconductor-enmix

• bioconductor-dmrcate

• bioconductor-quantro

• bioconductor-illuminahumanmethylationepicmanifest

• bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19

• bioconductor-shinymethyl

• bioconductor-tcgabiolinksgui

• bioconductor-minfidata

• bioconductor-methylumi

• bioconductor-flowsorted.cordbloodnorway.450k

• bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19

• bioconductor-funtoonorm

• bioconductor-methylaid

• bioconductor-illuminahumanmethylation27kmanifest

• bioconductor-flowsorted.blood.epic

• bioconductor-minfidataepic

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-minfi

and update with:

conda update bioconductor-minfi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-minfi:<tag>

(see bioconductor-minfi/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-minfi/README.html)