recipe bioconductor-minfi

Tools to analyze & visualize Illumina Infinium methylation arrays.

Homepage:https://bioconductor.org/packages/3.8/bioc/html/minfi.html License:Artistic-2.0 Recipe:/bioconductor-minfi/meta.yaml Links:biotools: minfi

package bioconductor-minfi

Versions:

1.28.0-0, 1.26.2-0, 1.24.0-0, 1.22.1-0, 1.20.0-0, 1.16.1-0

Depends:

• bioconductor-biobase >=2.42.0,<2.43.0
• bioconductor-biocgenerics >=0.28.0,<0.29.0
• bioconductor-biocparallel >=1.16.0,<1.17.0
• bioconductor-biostrings >=2.50.0,<2.51.0
• bioconductor-bumphunter >=1.24.0,<1.25.0
• bioconductor-delayedarray >=0.8.0,<0.9.0
• bioconductor-delayedmatrixstats >=1.4.0,<1.5.0
• bioconductor-genefilter >=1.64.0,<1.65.0
• bioconductor-genomeinfodb >=1.18.0,<1.19.0
• bioconductor-genomicranges >=1.34.0,<1.35.0
• bioconductor-geoquery >=2.50.0,<2.51.0
• bioconductor-hdf5array >=1.10.0,<1.11.0
• bioconductor-illuminaio >=0.24.0,<0.25.0
• bioconductor-iranges >=2.16.0,<2.17.0
• bioconductor-limma >=3.38.0,<3.39.0
• bioconductor-preprocesscore >=1.44.0,<1.45.0
• bioconductor-s4vectors >=0.20.0,<0.21.0
• bioconductor-siggenes >=1.56.0,<1.57.0
• bioconductor-summarizedexperiment >=1.12.0,<1.13.0
• r-base >=3.5.1,<3.5.2.0a0
• r-beanplot
• r-data.table
• r-lattice
• r-mass
• r-mclust
• r-nlme
• r-nor1mix
• r-quadprog
• r-rcolorbrewer
• r-reshape

Required By:

• bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19
• bioconductor-flowsorted.cordblood.450k
• bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19
• bioconductor-flowsorted.cordbloodnorway.450k
• bioconductor-quantro
• bioconductor-tcgabiolinksgui
• bioconductor-minfidataepic
• bioconductor-missmethyl
• bioconductor-shinymethyl
• bioconductor-bigmelon
• bioconductor-flowsorted.blood.epic
• bioconductor-flowsorted.dlpfc.450k
• bioconductor-champ
• bioconductor-illuminahumanmethylation450kmanifest
• bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19
• bioconductor-skewr
• bioconductor-funtoonorm
• bioconductor-illuminahumanmethylation27kmanifest
• bioconductor-methyvim
• bioconductor-meal
• bioconductor-methylumi
• bioconductor-enmix
• bioconductor-compartmap
• bioconductor-methylaid
• bioconductor-flowsorted.blood.450k
• bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19
• bioconductor-methyvimdata
• bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19
• bioconductor-minfidata
• bioconductor-dmrcate
• bioconductor-illuminahumanmethylationepicmanifest

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-minfi

and update with:

conda update bioconductor-minfi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-minfi:<tag>

(see bioconductor-minfi/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-minfi/README.html)