Package Recipe 'bioconductor-minfi'

recipe bioconductor-minfi

Analyze Illumina Infinium DNA methylation arrays

Homepage: https://bioconductor.org/packages/3.11/bioc/html/minfi.html
License: Artistic-2.0
Recipe: /bioconductor-minfi/meta.yaml
Links: biotools: minfi

Tools to analyze & visualize Illumina Infinium methylation arrays.

package bioconductor-minfi¶

Versions

1.34.0-0, 1.32.0-0, 1.30.0-1, 1.28.0-0, 1.26.2-0, 1.24.0-0, 1.22.1-0, 1.20.0-0, 1.16.1-0

Depends

bioconductor-biobase >=2.48.0,<2.49.0
bioconductor-biocgenerics >=0.34.0,<0.35.0
bioconductor-biocparallel >=1.22.0,<1.23.0
bioconductor-biostrings >=2.56.0,<2.57.0
bioconductor-bumphunter >=1.30.0,<1.31.0
bioconductor-delayedarray >=0.14.0,<0.15.0
bioconductor-delayedmatrixstats >=1.10.0,<1.11.0
bioconductor-genefilter >=1.70.0,<1.71.0
bioconductor-genomeinfodb >=1.24.0,<1.25.0
bioconductor-genomicranges >=1.40.0,<1.41.0
bioconductor-geoquery >=2.56.0,<2.57.0
bioconductor-hdf5array >=1.16.0,<1.17.0
bioconductor-illuminaio >=0.30.0,<0.31.0
bioconductor-iranges >=2.22.0,<2.23.0
bioconductor-limma >=3.44.0,<3.45.0
bioconductor-preprocesscore >=1.50.0,<1.51.0
bioconductor-s4vectors >=0.26.0,<0.27.0
bioconductor-siggenes >=1.62.0,<1.63.0
bioconductor-summarizedexperiment >=1.18.0,<1.19.0
r-base >=4.0,<4.1.0a0
r-beanplot
r-data.table
r-lattice
r-mass
r-mclust
r-nlme
r-nor1mix
r-quadprog
r-rcolorbrewer
r-reshape

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-minfi

and update with:

conda update bioconductor-minfi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-minfi:<tag>

(see bioconductor-minfi/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-minfi/README.html)