recipe bioconductor-mirintegrator

Integrating microRNA expression into signaling pathways for pathway analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/mirIntegrator.html

License:

GPL (>=3)

Recipe:

/bioconductor-mirintegrator/meta.yaml

Links:

biotools: mirintegrator, doi: 10.1038/srep29251

Tools for augmenting signaling pathways to perform pathway analysis of microRNA and mRNA expression levels.

package bioconductor-mirintegrator

Versions:

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0, 

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-graph >=1.76.0,<1.77.0

• bioconductor-org.hs.eg.db >=3.16.0,<3.17.0

• bioconductor-rgraphviz >=2.42.0,<2.43.0

• bioconductor-rontotools >=2.26.0,<2.27.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mirintegrator

and update with:

conda update bioconductor-mirintegrator

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mirintegrator:<tag>

(see bioconductor-mirintegrator/tags for valid values for <tag>)

Download stats

Link to this page

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