recipe bioconductor-mirmine

Data package with miRNA-seq datasets from miRmine database as RangedSummarizedExperiment



GPL (>= 3)



miRmine database is a collection of expression profiles from different publicly available miRNA-seq datasets, Panwar et al (2017) miRmine: A Database of Human miRNA Expression, prepared with this data package as RangedSummarizedExperiment.

package bioconductor-mirmine

(downloads) docker_bioconductor-mirmine



depends bioconductor-summarizedexperiment:


depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-mirmine

and update with::

   mamba update bioconductor-mirmine

To create a new environment, run:

mamba create --name myenvname bioconductor-mirmine

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-mirmine/tags`_ for valid values for ``<tag>``)

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