recipe bioconductor-mirnatap

The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).

Homepage

https://bioconductor.org/packages/3.9/bioc/html/miRNAtap.html

License

GPL-2

Recipe

/bioconductor-mirnatap/meta.yaml

Links

biotools: mirnatap, doi: 10.1038/nmeth.3252

package bioconductor-mirnatap

Versions

1.18.0-1, 1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-0

Depends

• bioconductor-annotationdbi >=1.46.0,<1.47.0

• r-base >=3.6,<3.7.0a0

• r-dbi

• r-plyr

• r-rsqlite

• r-sqldf

• r-stringr

Required By

• bioconductor-mirnatap.db

• bioconductor-spidermir

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mirnatap

and update with:

conda update bioconductor-mirnatap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mirnatap:<tag>

(see bioconductor-mirnatap/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mirnatap/README.html)