recipe bioconductor-mirnatap

miRNAtap: microRNA Targets - Aggregated Predictions

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/miRNAtap.html

License:

GPL-2

Recipe:

/bioconductor-mirnatap/meta.yaml

Links:

biotools: mirnatap, doi: 10.1038/nmeth.3252

The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).

package bioconductor-mirnatap

Versions:

1.32.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.23.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1, 

1.32.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.23.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• r-base >=4.2,<4.3.0a0

• r-dbi

• r-plyr

• r-rsqlite

• r-sqldf

• r-stringr

Required By:

• bioconductor-mirnatap.db

• bioconductor-spidermir

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mirnatap

and update with:

conda update bioconductor-mirnatap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mirnatap:<tag>

(see bioconductor-mirnatap/tags for valid values for <tag>)

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