recipe bioconductor-mmappr2data

Sample Data for MMAPPR2






Contains data for illustration purposes in the MMAPPR2 package, namely simulated BAM files containing RNA-Seq data for a mutation in the slc24a5 gene, taken from the GRCz11 genome. Also contains reference sequence and annotation files for the region.

package bioconductor-mmappr2data

(downloads) docker_bioconductor-mmappr2data



depends bioconductor-data-packages:


depends bioconductor-rsamtools:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-mmappr2data

and update with::

   mamba update bioconductor-mmappr2data

To create a new environment, run:

mamba create --name myenvname bioconductor-mmappr2data

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-mmappr2data/tags`_ for valid values for ``<tag>``)

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