recipe bioconductor-msbackendmassbank

Mass Spectrometry Data Backend for MassBank record Files

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MsBackendMassbank.html

License:

Artistic-2.0

Recipe:

/bioconductor-msbackendmassbank/meta.yaml

Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.

package bioconductor-msbackendmassbank

Versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-mscoreutils >=1.10.0,<1.11.0

• bioconductor-protgenerics >=1.30.0,<1.31.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-spectra >=1.8.0,<1.9.0

• r-base >=4.2,<4.3.0a0

• r-dbi

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-msbackendmassbank

and update with:

conda update bioconductor-msbackendmassbank

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msbackendmassbank:<tag>

(see bioconductor-msbackendmassbank/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-msbackendmassbank/README.html)