recipe bioconductor-msbackendrawfilereader

Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/MsBackendRawFileReader.html

License:

GPL-3

Recipe:

/bioconductor-msbackendrawfilereader/meta.yaml

implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package Methods defined in this package are supposed to extend the Spectra Bioconductor package.

package bioconductor-msbackendrawfilereader

(downloads) docker_bioconductor-msbackendrawfilereader

versions:

1.8.1-0,  1.6.0-0,  1.4.0-0,  1.0.0-0

depends bioconductor-biocparallel:

>=1.36.0,<1.37.0

depends bioconductor-iranges:

>=2.36.0,<2.37.0

depends bioconductor-mscoreutils:

>=1.14.0,<1.15.0

depends bioconductor-rawrr:

>=1.10.0,<1.11.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends bioconductor-spectra:

>=1.12.0,<1.13.0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-msbackendrawfilereader

and update with::

   mamba update bioconductor-msbackendrawfilereader

To create a new environment, run:

mamba create --name myenvname bioconductor-msbackendrawfilereader

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-msbackendrawfilereader:<tag>

(see `bioconductor-msbackendrawfilereader/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-msbackendrawfilereader/README.html)