recipe bioconductor-msbackendrawfilereader

Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MsBackendRawFileReader.html

License:

GPL-3

Recipe:

/bioconductor-msbackendrawfilereader/meta.yaml

implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package (Kockmann T. et al. (2020) <doi:10.1101/2020.10.30.362533>) Methods defined in this package are supposed to extend the Spectra Bioconductor package.

package bioconductor-msbackendrawfilereader

Versions:

1.4.0-0,  1.0.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-mscoreutils >=1.10.0,<1.11.0

• bioconductor-rawrr >=1.6.0,<1.7.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-spectra >=1.8.0,<1.9.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-msbackendrawfilereader

and update with:

conda update bioconductor-msbackendrawfilereader

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msbackendrawfilereader:<tag>

(see bioconductor-msbackendrawfilereader/tags for valid values for <tag>)

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