- recipe bioconductor-msgbsr
msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/msgbsR.html
- License
GPL-2
- Recipe
Pipeline for the anaysis of a MS-GBS experiment.
- package bioconductor-msgbsr¶
-
- Versions
1.18.0-0
,1.16.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.6.0-0
- Depends
bioconductor-bsgenome
>=1.62.0,<1.63.0
bioconductor-easyrnaseq
>=2.30.0,<2.31.0
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-ggbio
>=1.42.0,<1.43.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-msgbsr
and update with:
conda update bioconductor-msgbsr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-msgbsr:<tag>
(see bioconductor-msgbsr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-msgbsr/README.html)