recipe bioconductor-msgbsr

Pipeline for the anaysis of a MS-GBS experiment.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/msgbsR.html

License

GPL-2

Recipe

/bioconductor-msgbsr/meta.yaml

package bioconductor-msgbsr

Versions

1.6.0-0

Depends

• bioconductor-bsgenome >=1.50.0,<1.51.0

• bioconductor-easyrnaseq >=2.18.0,<2.19.0

• bioconductor-edger >=3.24.0,<3.25.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicalignments >=1.18.0,<1.19.0

• bioconductor-genomicfeatures >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-ggbio >=1.30.0,<1.31.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-summarizedexperiment >=1.12.0,<1.13.0

• r-base >=3.5.1,<3.5.2.0a0

• r-ggplot2

• r-plyr

• r-r.utils

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-msgbsr

and update with:

conda update bioconductor-msgbsr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msgbsr:<tag>

(see bioconductor-msgbsr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-msgbsr/README.html)