recipe bioconductor-msgbsr

msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions

Homepage

https://bioconductor.org/packages/3.10/bioc/html/msgbsR.html

License

GPL-2

Recipe

/bioconductor-msgbsr/meta.yaml

Pipeline for the anaysis of a MS-GBS experiment.

package bioconductor-msgbsr

Versions

1.10.0-0, 1.8.0-1, 1.6.0-0

Depends

• bioconductor-bsgenome >=1.54.0,<1.55.0

• bioconductor-easyrnaseq >=2.22.0,<2.23.0

• bioconductor-edger >=3.28.0,<3.29.0

• bioconductor-genomeinfodb >=1.22.0,<1.23.0

• bioconductor-genomicalignments >=1.22.0,<1.23.0

• bioconductor-genomicfeatures >=1.38.0,<1.39.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-ggbio >=1.34.0,<1.35.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-rsamtools >=2.2.0,<2.3.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• bioconductor-summarizedexperiment >=1.16.0,<1.17.0

• r-base >=3.6,<3.7.0a0

• r-ggplot2

• r-plyr

• r-r.utils

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-msgbsr

and update with:

conda update bioconductor-msgbsr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msgbsr:<tag>

(see bioconductor-msgbsr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-msgbsr/README.html)