recipe bioconductor-msgbsr

msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions

Homepage

https://bioconductor.org/packages/3.11/bioc/html/msgbsR.html

License

GPL-2

Recipe

/bioconductor-msgbsr/meta.yaml

Pipeline for the anaysis of a MS-GBS experiment.

package bioconductor-msgbsr

Versions

1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0

Depends

• bioconductor-bsgenome >=1.56.0,<1.57.0

• bioconductor-easyrnaseq >=2.24.0,<2.25.0

• bioconductor-edger >=3.30.0,<3.31.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicalignments >=1.24.0,<1.25.0

• bioconductor-genomicfeatures >=1.40.0,<1.41.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-ggbio >=1.36.0,<1.37.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-ggplot2

• r-plyr

• r-r.utils

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-msgbsr

and update with:

conda update bioconductor-msgbsr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msgbsr:<tag>

(see bioconductor-msgbsr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-msgbsr/README.html)