recipe bioconductor-msgbsr

msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions

Homepage

https://bioconductor.org/packages/3.13/bioc/html/msgbsR.html

License

GPL-2

Recipe

/bioconductor-msgbsr/meta.yaml

Pipeline for the anaysis of a MS-GBS experiment.

package bioconductor-msgbsr

Versions

1.16.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0

Depends

• bioconductor-bsgenome >=1.60.0,<1.61.0

• bioconductor-easyrnaseq >=2.28.0,<2.29.0

• bioconductor-edger >=3.34.0,<3.35.0

• bioconductor-genomeinfodb >=1.28.0,<1.29.0

• bioconductor-genomicalignments >=1.28.0,<1.29.0

• bioconductor-genomicfeatures >=1.44.0,<1.45.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-ggbio >=1.40.0,<1.41.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-rsamtools >=2.8.0,<2.9.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• bioconductor-summarizedexperiment >=1.22.0,<1.23.0

• r-base >=4.1,<4.2.0a0

• r-ggplot2

• r-plyr

• r-r.utils

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-msgbsr

and update with:

conda update bioconductor-msgbsr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msgbsr:<tag>

(see bioconductor-msgbsr/tags for valid values for <tag>)

Download stats

Link to this page

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