- recipe bioconductor-msigdb
An ExperimentHub Package for the Molecular Signatures Database (MSigDB)
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/msigdb.html
- License:
CC BY 4.0
- Recipe:
This package provides the Molecular Signatures Database (MSigDB) in a R accessible objects. Signatures are stored in GeneSet class objects form the GSEABase package and the entire database is stored in a GeneSetCollection object. These data are then hosted on the ExperimentHub. Data used in this package was obtained from the MSigDB of the Broad Institute. Metadata for each gene set is stored along with the gene set in the GeneSet class object.
- package bioconductor-msigdb¶
-
- Versions:
1.6.0-0
,1.2.0-1
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-data-packages
>=20221108
bioconductor-experimenthub
>=2.6.0,<2.7.0
bioconductor-gseabase
>=1.60.0,<1.61.0
bioconductor-org.hs.eg.db
>=3.16.0,<3.17.0
bioconductor-org.mm.eg.db
>=3.16.0,<3.17.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-msigdb
and update with:
conda update bioconductor-msigdb
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-msigdb:<tag>
(see bioconductor-msigdb/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-msigdb/README.html)