- recipe bioconductor-msmstests
LC-MS/MS Differential Expression Tests
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/msmsTests.html
- License
GPL-2
- Recipe
Statistical tests for label-free LC-MS/MS data by spectral counts, to discover differentially expressed proteins between two biological conditions. Three tests are available: Poisson GLM regression, quasi-likelihood GLM regression, and the negative binomial of the edgeR package.The three models admit blocking factors to control for nuissance variables.To assure a good level of reproducibility a post-test filter is available, where we may set the minimum effect size considered biologicaly relevant, and the minimum expression of the most abundant condition.
- package bioconductor-msmstests¶
-
- Versions
1.32.0-0
,1.30.0-0
,1.28.0-1
,1.28.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.20.1-0
- Depends
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-msmseda
>=1.32.0,<1.33.0
bioconductor-msnbase
>=2.20.0,<2.21.0
bioconductor-qvalue
>=2.26.0,<2.27.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-msmstests
and update with:
conda update bioconductor-msmstests
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-msmstests:<tag>
(see bioconductor-msmstests/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-msmstests/README.html)