recipe bioconductor-msstats

Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments

Homepage

https://bioconductor.org/packages/3.11/bioc/html/MSstats.html

License

Artistic-2.0

Recipe

/bioconductor-msstats/meta.yaml

A set of tools for statistical relative protein significance analysis in DDA, SRM and DIA experiments.

package bioconductor-msstats

Versions

3.20.1-0,  3.20.0-0,  3.18.0-0,  3.16.0-1,  3.14.1-0,  3.14.0-0

Depends

• bioconductor-limma >=3.44.0,<3.45.0

• bioconductor-marray >=1.66.0,<1.67.0

• bioconductor-preprocesscore >=1.50.0,<1.51.0

• r-base >=4.0,<4.1.0a0

• r-broom

• r-data.table

• r-dosnow

• r-dplyr

• r-foreach

• r-ggplot2

• r-ggrepel

• r-gplots

• r-lme4

• r-mass

• r-minpack.lm

• r-purrr

• r-randomforest

• r-reshape2

• r-snow

• r-statmod

• r-stringr

• r-survival

• r-tidyr

Required By

• bioconductor-msstatssamplesize

• bioconductor-artms

• bioconductor-msstatstmt

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-msstats

and update with:

conda update bioconductor-msstats

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msstats:<tag>

(see bioconductor-msstats/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-msstats/README.html)