recipe bioconductor-msstatssamplesize

Simulation tool for optimal design of high-dimensional MS-based proteomics experiment

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MSstatsSampleSize.html

License:

Artistic-2.0

Recipe:

/bioconductor-msstatssamplesize/meta.yaml

The packages estimates the variance in the input protein abundance data and simulates data with predefined number of biological replicates based on the variance estimation. It reports the mean predictive accuracy of the classifier and mean protein importance over multiple iterations of the simulation.

package bioconductor-msstatssamplesize

Versions:

1.12.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-msstats >=4.6.0,<4.7.0

• r-base >=4.2,<4.3.0a0

• r-caret

• r-ggplot2

• r-gridextra

• r-reshape2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-msstatssamplesize

and update with:

conda update bioconductor-msstatssamplesize

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msstatssamplesize:<tag>

(see bioconductor-msstatssamplesize/tags for valid values for <tag>)

Download stats

Link to this page

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