recipe bioconductor-msstatstmt

Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling

Homepage

https://bioconductor.org/packages/3.13/bioc/html/MSstatsTMT.html

License

Artistic-2.0

Recipe

/bioconductor-msstatstmt/meta.yaml

The package provides statistical tools for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling. It provides multiple functionalities, including aata visualization, protein quantification and normalization, and statistical modeling and inference. Furthermore, it is inter-operable with other data processing tools, such as Proteome Discoverer, MaxQuant, OpenMS and SpectroMine.

package bioconductor-msstatstmt

(downloads) docker_bioconductor-msstatstmt

Versions

2.0.0-01.8.2-11.8.2-01.8.0-01.6.0-01.4.0-01.2.5-01.1.2-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-msstatstmt

and update with:

conda update bioconductor-msstatstmt

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msstatstmt:<tag>

(see bioconductor-msstatstmt/tags for valid values for <tag>)

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