recipe bioconductor-mudata

Serialization for MultiAssayExperiment Objects

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/MuData.html

License:

GPL-3

Recipe:

/bioconductor-mudata/meta.yaml

Save MultiAssayExperiments to h5mu files supported by muon and mudata. Muon is a Python framework for multimodal omics data analysis. It uses an HDF5-based format for data storage.

package bioconductor-mudata

versions:

1.6.0-0,  1.4.0-0,  1.2.0-0

depends bioconductor-delayedarray:

>=0.28.0,<0.29.0

depends bioconductor-multiassayexperiment:

>=1.28.0,<1.29.0

depends bioconductor-rhdf5:

>=2.46.0,<2.47.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends bioconductor-singlecellexperiment:

>=1.24.0,<1.25.0

depends bioconductor-summarizedexperiment:

>=1.32.0,<1.33.0

depends r-base:

>=4.3,<4.4.0a0

depends r-matrix:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-mudata

and update with::

   mamba update bioconductor-mudata

To create a new environment, run:

mamba create --name myenvname bioconductor-mudata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-mudata:<tag>

(see `bioconductor-mudata/tags`_ for valid values for ``<tag>``)

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Link to this page

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