recipe bioconductor-multigsea

Combining GSEA-based pathway enrichment with multi omics data integration

Homepage

https://bioconductor.org/packages/3.13/bioc/html/multiGSEA.html

License

GPL-3

Recipe

/bioconductor-multigsea/meta.yaml

Extracted features from pathways derived from 8 different databases (KEGG, Reactome, Biocarta, etc.) can be used on transcriptomic, proteomic, and/or metabolomic level to calculate a combined GSEA-based enrichment score.

package bioconductor-multigsea

(downloads) docker_bioconductor-multigsea

Versions

1.2.0-01.0.1-11.0.1-01.0.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-multigsea

and update with:

conda update bioconductor-multigsea

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-multigsea:<tag>

(see bioconductor-multigsea/tags for valid values for <tag>)