recipe bioconductor-mygene

Access MyGene.Info_ services

Homepage

https://bioconductor.org/packages/3.11/bioc/html/mygene.html

License

Artistic-2.0

Recipe

/bioconductor-mygene/meta.yaml

Links

biotools: mygene, doi: 10.1101/009333

MyGene.Info_ provides simple-to-use REST web services to query/retrieve gene annotation data. It’s designed with simplicity and performance emphasized. *mygene*, is an easy-to-use R wrapper to access MyGene.Info_ services.

package bioconductor-mygene

Versions

1.24.0-0, 1.22.0-0, 1.20.0-1, 1.18.0-0, 1.16.2-0, 1.14.0-0

Depends

• bioconductor-genomicfeatures >=1.40.0,<1.41.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• r-base >=4.0,<4.1.0a0

• r-hmisc

• r-httr >=0.3

• r-jsonlite >=0.9.7

• r-plyr

• r-sqldf

Required By

• bioconductor-metabosignal

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mygene

and update with:

conda update bioconductor-mygene

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mygene:<tag>

(see bioconductor-mygene/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mygene/README.html)