recipe bioconductor-mzr

parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/mzR.html

License:

Artistic-2.0

Recipe:

/bioconductor-mzr/meta.yaml

Links:

biotools: mzr

mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a subset of the proteowizard library for mzXML, mzML and mzIdentML. The netCDF reading code has previously been used in XCMS.

package bioconductor-mzr

Versions:

2.32.0-1,  2.32.0-0,  2.28.0-2,  2.28.0-1,  2.28.0-0,  2.26.0-0,  2.24.1-0,  2.24.0-0,  2.22.0-0, 

2.32.0-1,  2.32.0-0,  2.28.0-2,  2.28.0-1,  2.28.0-0,  2.26.0-0,  2.24.1-0,  2.24.0-0,  2.22.0-0,  2.20.0-0,  2.18.0-1,  2.16.2-1,  2.16.2-0,  2.16.0-0,  2.12.0-1,  2.10.0-0,  2.6.3-1,  2.6.3-0,  2.4.1-1

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-protgenerics >=1.30.0,<1.31.0

• bioconductor-rhdf5lib >=1.20.0,<1.21.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-ncdf4

• r-rcpp >=0.10.1

Required By:

• r-george

• bioconductor-adductomicsr

• bioconductor-clumsid

• bioconductor-topdownr

• r-recetox-aplcms

• bioconductor-mspurity

• bioconductor-rmassbank

• bioconductor-simat

• bioconductor-xcms

• bioconductor-msnid

• bioconductor-yamss

• bioconductor-peakpanther

• bioconductor-msnbase

• bioconductor-targetdecoy

• bioconductor-dialignr

• r-msqrob

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mzr

and update with:

conda update bioconductor-mzr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mzr:<tag>

(see bioconductor-mzr/tags for valid values for <tag>)

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