recipe bioconductor-nanostringdiff

Differential Expression Analysis of NanoString nCounter Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/NanoStringDiff.html

License:

GPL

Recipe:

/bioconductor-nanostringdiff/meta.yaml

This Package utilizes a generalized linear model(GLM) of the negative binomial family to characterize count data and allows for multi-factor design. NanoStrongDiff incorporate size factors, calculated from positive controls and housekeeping controls, and background level, obtained from negative controls, in the model framework so that all the normalization information provided by NanoString nCounter Analyzer is fully utilized.

package bioconductor-nanostringdiff

(downloads) docker_bioconductor-nanostringdiff

Versions:
1.28.0-01.24.0-21.24.0-11.24.0-01.22.0-01.20.0-11.20.0-01.18.0-01.16.0-0

1.28.0-01.24.0-21.24.0-11.24.0-01.22.0-01.20.0-11.20.0-01.18.0-01.16.0-01.14.0-11.12.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-nanostringdiff

and update with:

conda update bioconductor-nanostringdiff

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nanostringdiff:<tag>

(see bioconductor-nanostringdiff/tags for valid values for <tag>)

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