- recipe bioconductor-nanotube
An Easy Pipeline for NanoString nCounter Data Analysis
GPL-3 + file LICENSE
NanoTube includes functions for the processing, quality control, analysis, and visualization of NanoString nCounter data. Analysis functions include differential analysis and gene set analysis methods, as well as postprocessing steps to help understand the results. Additional functions are included to enable interoperability with other Bioconductor NanoString data analysis packages.
- package bioconductor-nanotube¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-nanotube and update with:: mamba update bioconductor-nanotube
To create a new environment, run:
mamba create --name myenvname bioconductor-nanotube
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-nanotube:<tag> (see `bioconductor-nanotube/tags`_ for valid values for ``<tag>``)