recipe bioconductor-nethet

A bioconductor package for high-dimensional exploration of biological network heterogeneity

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/nethet.html

License:

GPL-2

Recipe:

/bioconductor-nethet/meta.yaml

Package nethet is an implementation of statistical solid methodology enabling the analysis of network heterogeneity from high-dimensional data. It combines several implementations of recent statistical innovations useful for estimation and comparison of networks in a heterogeneous, high-dimensional setting. In particular, we provide code for formal two-sample testing in Gaussian graphical models (differential network and GGM-GSA; Stadler and Mukherjee, 2013, 2014) and make a novel network-based clustering algorithm available (mixed graphical lasso, Stadler and Mukherjee, 2013).

package bioconductor-nethet

Versions:

1.30.0-0,  1.26.0-2,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0, 

1.30.0-0,  1.26.0-2,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.1-0,  1.14.0-0

Depends:

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-multtest >=2.54.0,<2.55.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-compquadform

• r-genenet

• r-ggm

• r-ggplot2

• r-glasso

• r-glmnet

• r-gsa

• r-huge

• r-icsnp

• r-mclust

• r-mvtnorm

• r-network

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-nethet

and update with:

conda update bioconductor-nethet

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nethet:<tag>

(see bioconductor-nethet/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-nethet/README.html)