recipe bioconductor-nethet

A bioconductor package for high-dimensional exploration of biological network heterogeneity

Homepage

https://bioconductor.org/packages/3.11/bioc/html/nethet.html

License

GPL-2

Recipe

/bioconductor-nethet/meta.yaml

Package nethet is an implementation of statistical solid methodology enabling the analysis of network heterogeneity from high-dimensional data. It combines several implementations of recent statistical innovations useful for estimation and comparison of networks in a heterogeneous, high-dimensional setting. In particular, we provide code for formal two-sample testing in Gaussian graphical models (differential network and GGM-GSA; Stadler and Mukherjee, 2013, 2014) and make a novel network-based clustering algorithm available (mixed graphical lasso, Stadler and Mukherjee, 2013).

package bioconductor-nethet

Versions

1.20.0-0,  1.18.0-0,  1.16.1-0,  1.14.0-0

Depends

• bioconductor-limma >=3.44.0,<3.45.0

• bioconductor-multtest >=2.44.0,<2.45.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.5.0

• liblapack >=3.8.0,<3.9.0a0

• r-base >=4.0,<4.1.0a0

• r-compquadform

• r-genenet

• r-ggm

• r-ggplot2

• r-glasso

• r-glmnet

• r-gsa

• r-huge

• r-icsnp

• r-mclust

• r-mvtnorm

• r-network

• r-parcor

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-nethet

and update with:

conda update bioconductor-nethet

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nethet:<tag>

(see bioconductor-nethet/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-nethet/README.html)