recipe bioconductor-nethet

A bioconductor package for high-dimensional exploration of biological network heterogeneity

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/nethet.html

License:

GPL-2

Recipe:

/bioconductor-nethet/meta.yaml

Package nethet is an implementation of statistical solid methodology enabling the analysis of network heterogeneity from high-dimensional data. It combines several implementations of recent statistical innovations useful for estimation and comparison of networks in a heterogeneous, high-dimensional setting. In particular, we provide code for formal two-sample testing in Gaussian graphical models (differential network and GGM-GSA; Stadler and Mukherjee, 2013, 2014) and make a novel network-based clustering algorithm available (mixed graphical lasso, Stadler and Mukherjee, 2013).

package bioconductor-nethet

versions:

1.38.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.26.0-2,  1.26.0-1,  1.26.0-0,  1.24.0-0, 

1.38.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.26.0-2,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.1-0,  1.14.0-0

depends bioconductor-limma:

>=3.62.0,<3.63.0

depends bioconductor-limma:

>=3.62.0,<3.63.0a0

depends bioconductor-multtest:

>=2.62.0,<2.63.0

depends bioconductor-multtest:

>=2.62.0,<2.63.0a0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc:

>=13

depends liblapack:

>=3.9.0,<4.0a0

depends r-base:

>=4.4,<4.5.0a0

depends r-compquadform:

depends r-genenet:

depends r-ggm:

depends r-ggplot2:

depends r-glasso:

depends r-glmnet:

depends r-gsa:

depends r-huge:

depends r-icsnp:

depends r-mclust:

depends r-mvtnorm:

depends r-network:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-nethet

and update with::

   mamba update bioconductor-nethet

To create a new environment, run:

mamba create --name myenvname bioconductor-nethet

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-nethet:<tag>

(see `bioconductor-nethet/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-nethet/README.html)