bioconductor-netpathminer

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NetPathMiner is a general framework for network path mining using genome-scale networks. It constructs networks from KGML, SBML and BioPAX files, providing three network representations, metabolic, reaction and gene representations. NetPathMiner finds active paths and applies machine learning methods to summarize found paths for easy interpretation. It also provides static and interactive visualizations of networks and paths to aid manual investigation.

Home http://bioconductor.org/packages/3.6/bioc/html/NetPathMiner.html
Versions 1.12.1, 1.14.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-netpathminer

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-netpathminer

and update with:

conda update bioconductor-netpathminer

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-netpathminer.